Sample Datasets - CosmoSim

The purpose of this demonstration is to explore reasonable parameters for dataset generation. We aim to follow established custom in the literature, as far as possible.

Because we centre the images on the visible light, there will usually be a lot of empty background to crop. Making the calculations on
larger images will prevent many cropping artifacts. We also note that the image size is limited by computer memory, when they are used with machine learning. We were unable to use $512\times512$ images on a GPU with 50Gb memory, but $256\times256$ work.

Parameter ranges¶

To build training sets we need to generate random sets of plausible images. The ranges and probability distribution may vary from study to study. The parameters we establish here are designed to be realistic examples of strong lensing, erring on the side of wider ranges.

Parameter	Symnol	Identifier	Distribution	Range
Einstein radius	$\theta_E$	`einsteinradius`	Uniform	$0.1"\le\theta_E\le3.0"$
Source position	$R$	`position.r`	Uniform	$R\le1.2\cdot\theta_E$
Source location	$\phi$	`position.phi`	Uniform	$0\le\phi\le180$
Lens orientation		`orientation`	Uniform	$0\ldots180$
Source orientation			Uniform	$0\ldots180$
Lens ellipticity	$f$	`ellipseratio`	Uniform	$0.1\le f\le 0.9$
Source size	$\sigma$	`sigma`	Uniform	$0.04"\le f\le 0.2"$
Sersic index	$n_s$	`n_sersic`	Uniform	$1\le n_s\le 5$
Luminosity	$l$	`luminosity`	Exponential	$10\le l\le 20$ , $\lambda=2.0$

The source position is given in polar co-ordinates $(R,\phi)$ .
- The distance $R$ is chosen to be inside or around the critical curve, hence the limit $R\le c\theta_E$ for some constant $c$ .
Angles are given in degrees in the source code and chosen uniformly from a half circle, because of symmetry.
The source is spherical with a sersic profile.

Dataset generation¶

Before we start, lets check the version.

import CosmoSim
print( CosmoSim.__version__ )

3.2.4b1

The CosmoSim.dataset module provides the functions to generate random datasets. We will also use the Imge module as before.

import CosmoSim.dataset as csd
import CosmoSim.Image as csimg

The probability distribution is specified by a nested dict, typically defined in a TOML file, similar to those used in other CosmoSim modules. However, the dataset submodule does not use the Parameters class for its parameters at present.

cfg = csd.readtoml( "dataset.toml" )
display( cfg )

{'simulator': {'model': 'Raytrace',
  'size': 15000,
  'nterms': 4,
  'imagesize': 512,
  'cropsize': 256,
  'centred': True},
 'dataset': {'directory': 'images'},
 'lens': {'mode': 'SIE',
  'einstein-min': 2.5,
  'einstein-max': 75,
  'orientation-min': 0,
  'orientation-max': 180,
  'ellipseratio-min': 0.1,
  'ellipseratio-max': 0.9},
 'source': {'mode': 'SersicSphere',
  'n_sersic-min': 1,
  'n_sersic-max': 5,
  'luminosity-min': 20,
  'luminosity-max': 80,
  'luminosity-lambda': 2.0,
  'sigma-min': 5,
  'sigma-max': 50,
  'position': 'relative'},
 'position': {'phi-min': 0, 'phi-max': 360, 'r-relativemax': 1.2}}

We see that this configuration is set up to generate 24000 images in 256 $\times$ 256 format. We can see the paremeter ranges for the lens and for the source, which is a sphere with sersic profile. As of CosmoSim v3.1 we can still use the config parameter for both the simulation model and the lens; “raysie” is raytrace simualation of a SIE lens. This will change in v3.2, to require separate settings for simulator.model and lens.mode.

To get a single random object, we use the getline() function.

ob = csd.getline( cfg, fn="test.png" )
display( ob )

[getline] idx=0

index                        0
filename              test.png
model                 Raytrace
einsteinradius       65.630764
ellipseratio          0.485139
orientation         112.096694
lens                       SIE
source            SersicSphere
R                    69.539727
phi                 270.628755
sigma                28.591072
sigma2               13.244946
theta               106.773355
n_sersic              1.279306
luminosity           57.697089
x                     0.763102
y                    -69.53554
dtype: object

The filename fn is used for indexing as well as saving images in batch processing.
It can otherwise be omitted.

Generating the image¶

Observe that the row generated by getline() is a flat structure, and not the hierarchical structure used in TOML files. However, we can add the parameters from ob to the parameters object as follows.

import CosmoSim as cs
import CosmoSim.datagen as csg
import matplotlib.pyplot as plt

param = cs.Parameters( )
param.setRow( ob )

Now we can run the simulator as we have done in previous demos (e.g. .

imsim = csg.SimImage( param, verbose=0 )
im = imsim.getImage()
csimg.imshow( im, "Random image test" )

The image is very small, but that may well be correct. We can inspect the undistorted source image as well.

actual = imsim.getActualImage()
csimg.imshow( actual, "Undistorted source" )

Sampling¶

To get an impression of distribution, we can bulk generate configurations. Let’s first look at the dataset, as follows.

import pandas as pd
obs = [ csd.getline( cfg ) for ob in range(8) ]
df = pd.DataFrame( obs )
display(df)

[getline] idx=0
[getline] idx=0
[getline] idx=0
[getline] idx=0
[getline] idx=0
[getline] idx=0
[getline] idx=0
[getline] idx=0

Loading...

To create the images we make a quick function to generate a each one.

def getImage(ob):
    param = cs.Parameters(cliconfig=cfg)
    param.setRow( ob )
    sim = csg.SimImage( param, verbose=0 )
    im = sim.getImage() 
    csimg.crop( im, param.get( "cropsize" ), verbose=0 )
    return im

Each line of the function is as used above in the document, except that we have added cropping. Now we can quickly generate a list of images and display them.

import CosmoSim.Image as csimg

ims = [ getImage(ob) for ob in obs ]

fig = plt.figure(figsize=(20, 10))
fig.tight_layout(pad=0.0)
plt.subplots_adjust(hspace=0.1, wspace=0.1) 

for idx,im in enumerate(ims):
    fig.add_subplot(2, 4, idx+1)
    csimg.imshow( im )

Warning

There is a memory leak in the C++ code which threatens to crash the computer if the simulator is instantiated several hundred times. This can be avoided by instantiating the backend simulator only once. and pass it as an argument

sim = CosmoSim.CosmoSim()
imsim = csg.SimImage( param, sim=sim, verbose=0 )

This is of course a bug that we will try to resolve.
The scripts (below) avoid the issue by instantiating the backend simulator only once. Interactive applications are unlikely to instantiate enough instances to make a problem.

Bulk generation¶

Managing thousands of images in a Jupyter Notebook is not very practical. In most cases, one will want to generate the dataset from the command line

python -m CosmoSim.dataset config.toml dataset.csv

This generates a CSV file which can be used for image generation.

It is also possible to generate the dataset and the images in one go, using

python -m CosmoSim --rnd --toml config.toml --csvfile dataset.csv \
      --outfile roulette.csv --directory images

This generates the random dataset (dataset.csv) and the images in the images directory, as well as a dataset of corresponding roulettes amplitudes (roulette.csv).